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    Home » Recipes » Breakfast

    Easy Lemon Poppy Seed Muffins From Scratch

    This post may contain affiliate links.

    These easy lemon poppy seed muffins from scratch are going to make your mouth water. They're a delicious balance of tangy and sweet. They might be your new favorite.

    lemon poppy seed muffins with glaze
    Jump to:
    • Equipment:
    • Ingredients
    • Other Recipe Inspiration
    • 📖Recipe
    • How did they turn out?
    • 💭Comments
    the fluffy inside of the lemon poppy seed muffins

    Muffins are a good dessert to make if you're new in the kitchen. Lemon Poppy Seed have always been my favorite flavor of muffins. Usually when you buy them, they have artificial junk and so much excess white sugar! Although they were still delicious, I wanted to learn to make them from scratch. They turned out even better than I was expecting.

    lemon poppy seed muffins in a pile

    Lemon poppy seed muffins are a delightful treat that pairs the vibrant zest of lemon with the subtle crunch of poppy seeds. These muffins are light and fluffy, often featuring a tender crumb and a bright, citrusy flavor that comes from both lemon zest and juice. Ideal for breakfast, brunch, or a mid-day snack, they are typically topped with a sweet lemon glaze, enhancing their irresistible appeal. Whether enjoyed with a cup of tea or coffee, these muffins offer a refreshing twist on the traditional morning bakery item.

    To make these lemon poppy seed muffins from scratch you will need:

    ingredients for lemon poppy seed muffins

    Equipment:

    • Muffin Liners- I love these ones! They are parchment paper. This link is an affiliate link where I make a small commission on qualifying purchases at no extra cost to you. Thank you for your support!
    • Muffin tray- Regular size for 12 muffins
    • Lemon Zester
    • Lemon squeezer (optional- You can squeeze with your hands but this helps to prevent seeds from falling .)
    • 1 large mixing bowl and one small bowl for the glaze
    • Spatula
    • Oven
    muffin batter in a muffin liner

    Ingredients

    • 2 ¼ Cups all purpose flour
    • 1 Cup coconut sugar
    • 2 tablespoon Poppy Seeds
    • ¼ teaspoon salt
    • ¼ teaspoon baking soda
    • 2 teaspoon baking powder
    • 1 Cup plain greek yogurt- I used nonfat
    • ⅓ Cup milk- 2% or whole milk
    • ½ cup (1 stick) butter- melted
    • 2 eggs
    • 1 tablespoon freshly squeezed lemon juice- About 1 lemon
    • 2 tablespoon Lemon Zest- About 2 lemons worth
    • 1 teaspoon vanilla extract

    The Glaze

    • ½ Cup swerve powdered sugar replacement
    • Juice of one lemon

    Instructions

    1. Pre heat your oven to 425°F,line your 12 cup muffin pan and gather your ingredients.
    2. In one bowl mix: Flour, Salt, Poppy Seeds, Baking Powder and Baking Soda
    3. Zest your lemons, squeeze one lemon and melt your butter (the microwave is fine)
    4. In another bowl mix: Lemon Zest, Coconut sugar, melted butter and lemon juice mix well
    5. continue adding in the yogurt,milk,eggs,and vanilla.
    6. Pour your wet ingredients mixture into the dry ingredients mixture and stir until no dry spots are left.
    7. Your batter will be very thick and sticky and thats good.
    8. Evenly distribute among your 12 liners and bake for about 15 minutes or until tops are golden brown.
    9. While these are baking, prepare your glaze. Start by juicing your other lemon. Then combine with ½ Cup swerve powdered sugar replacement. Stir until it is a smooth consistency.
    10. Once muffins are done baking, let them cool and then apply your glaze.
    11. You can drizzle it with a spoon or put in a plastic bag and cut a tiny piece of the corner off.
    12. Enjoy! You just made lemon poppy seed muffins from scratch!

    Other Recipe Inspiration

    • High Protein Buffalo Wing Dip
    • Easy Almond Flour Oat Balls
    • Sourdough Discard Blueberry Muffins
    • Sourdough Chocolate Muffins
    • Sourdough Discard Banana Muffins
    • Sourdough Discard Waffles
    • Simple Blueberry Syrup

    If you loved this recipe, I would be so appreciative of a 5 star rating. Thank you for being one of my taste testers!

    📖Recipe

    lemon poppy seed muffin

    Easy Lemon Poppy Seed Muffins From Scratch

    These muffins have a delicious balance of tangy and sweet that is sure to make your mouth water.
    5 from 4 votes
    Print Recipe Pin Recipe
    Course Dessert
    Cuisine English
    Servings 12
    Calories 224 kcal

    Equipment

    • 1 lemon zester
    • 1 lemon squeezer optional
    • 2 bowls
    • 1 spatula
    • 1 12 ct muffin tray
    • 12 muffin liners
    • 1 Oven

    Ingredients
      

    • 2 ¼ Cups all purpose flour
    • 1 Cup coconut sugar
    • 2 tablespoon Poppy Seeds
    • ¼ teaspoon salt
    • ¼ teaspoon baking soda
    • 2 teaspoon baking powder
    • 1 Cup greek yogurt plain non fat
    • ⅓ Cup milk 2% or whole milk
    • ½ cup butter 1 stick
    • 2 eggs
    • 1 tablespoon lemon juice About 1 lemon freshly squeezed
    • 2 tablespoon Lemon Zest - About 2 lemons worth
    • 1 teaspoon vanilla extract

    The Glaze

    • 1 lemon freshly squeezed
    • ½ Cup Swerve powdered sugar replacement

    Instructions
     

    • Pre heat your oven to 425°F,line your 12 cup muffin pan and gather your ingredients.
    • In one bowl mix: Flour, Salt, Poppy Seeds, Baking Powder and Baking Soda
    • Zest your lemons, squeeze one lemon and melt your butter (the microwave is fine)
    • In another bowl mix: Lemon Zest, Coconut sugar, melted butter and lemon juice mix well
    • continue adding in the yogurt,milk,eggs,and vanilla.
    • Pour your wet ingredients mixture into the dry ingredients mixture and stir until no dry spots are left.
    • Your batter will be very thick and sticky and thats good.
    • Evenly distribute among your 12 liners and bake for about 15 minutes or until tops are golden brown.
    • While these are baking, prepare your glaze. Start by juicing your other lemon. Then combine with ½ Cup swerve powdered sugar replacement. Stir until it is a smooth consistency.
    • Once muffins are done baking, let them cool and then apply your glaze.
    • You can drizzle it with a spoon or put in a plastic bag and cut a tiny piece of the corner off.
    • Enjoy! You just made lemon poppy seed muffins from scratch!

    Notes

    You are welcome to use regular sugar instead of coconut sugar.  You can also use normal powdered sugar instead of swerve.  I just try to make mine a little healthier. 
    I also think any milk will work for the muffins.  I happened to use 2% because that is what I had on hand.

    Nutrition

    Calories: 224kcalCarbohydrates: 37gProtein: 5gFat: 9gSaturated Fat: 5gPolyunsaturated Fat: 1gMonounsaturated Fat: 2gTrans Fat: 0.3gCholesterol: 22mgSodium: 239mgPotassium: 88mgFiber: 1gSugar: 10gVitamin A: 251IUVitamin C: 7mgCalcium: 98mgIron: 1mg
    Keyword healthy muffins, snacks
    Tried this recipe?Let us know how it was!

    How did they turn out?

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    Reader Interactions

    Comments

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      Recipe Rating




    1. Annabelle says

      June 05, 2025 at 8:17 am

      5 stars
      Oooh I love muffins! Such a great on the go snack!

      Reply
    2. Emily says

      June 05, 2025 at 8:48 am

      These lemon poppy seed muffins look absolutely perfect, light, bright, and bursting with citrus flavor! Love that they’re made from scratch too. Can’t wait to try this recipe for a weekend treat!

      Reply
    3. Hailey says

      June 05, 2025 at 9:16 am

      5 stars
      We love all things lemon over here! Delicious - soft and tender muffins.

      Reply
    4. Kirsten from Multiply the Five Blog says

      June 05, 2025 at 1:15 pm

      These look absolutely delightful! I love the touch of a light glaze on them. I bet they are perfect!

      Reply
    5. Sarah says

      June 05, 2025 at 3:15 pm

      5 stars
      I love lemon poppy seed everything and I like the inclusion of yogurt! We'll give them a try in our home soon 🙂

      Reply
    6. Hayley says

      June 23, 2025 at 10:26 am

      5 stars
      These look wonderful and I love that they're not loaded with tons of refined sugar!

      Reply
      • Alisha says

        July 01, 2025 at 7:08 pm

        Yes, we try not to use too much! 🙂

        Reply

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    Hi, I'm Alisha. I'm a wife and also a mom to a couple awesome kids that keep me very busy. I enjoy spending time in the kitchen creating good food. I use this site for my own personal recipe book. While I love food, you'll find some other stuff here as well. I love to work on our home, share finds and diys, homeschool, and many other things.

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